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PRICKLE1

prickle planar cell polarity protein 1

Chromosome 12q12 HGNC:17019 Tier C
PRICKLE1 12q12 p arm q arm 12

PRICKLE1 is located on the long (q) arm of chromosome 12, at band 12q12. Arm ratio per GRCh38 - banding schematic.

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Available at Jeen Health

Clinical tests that include this

Overview

PRICKLE1 produces a protein that participates in planar cell polarity signalling, a fundamental developmental process whereby cells become organised in a coordinated direction across tissue planes. This highly conserved pathway operates during embryogenesis to establish proper cell orientation and migration patterns. When PRICKLE1 function is disrupted, the coordinated alignment of cells may be affected, potentially influencing the development of various organ systems. Research into this gene has expanded understanding of how cellular organisation is achieved during normal development and what happens when these processes are altered.

What the gene does

The PRICKLE1 protein functions as a core component of the planar cell polarity signalling cascade, a pathway that determines how cells orient themselves relative to their neighbours within a tissue layer. This protein interacts with other planar cell polarity pathway members to establish asymmetric protein distribution at cell membranes, creating directional cues that guide cellular behaviour. The protein's activity is particularly important during neural tube formation, where proper cell orientation is required for closure of the developing spinal cord and brain structures. PRICKLE1 also contributes to the organisation of cells in developing limbs and other tissues where directional growth and patterning are essential. By helping to establish these positional signals, the protein ensures that tissues develop with appropriate architecture and function.

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Chromosome location

PRICKLE1 is located on the long arm of chromosome 12 at position 12q12. This chromosomal region contains multiple genes involved in developmental processes. The precise number of exons and full genomic structure have been characterised through genome sequencing efforts, though detailed structural annotations continue to be refined as more comprehensive genomic data become available.

Protein structure

Domain architecture has not been experimentally characterised in detail for this protein.

Domain map · 831 amino acids
PET (14–122)LIM zinc-binding 1 (124–189)LIM zinc-binding 2 (189–249)LIM zinc-binding 3 (249–313)PET14–122LIM zinc-binding 1124–189LIM zinc-binding 3249–3131~416831
Domain - independent functional unit
🧬 Explore 3D structure on AlphaFold
UniProt:Q96MT3Length:831 aaStructure:AlphaFold

Key variants

Genetic variants in PRICKLE1 encompass a range of changes, from single nucleotide substitutions to larger deletions or insertions that may affect protein production or function. The clinical significance of many variants remains under investigation, as understanding the full spectrum of pathogenic changes requires correlation with clinical presentations and functional studies. Variant classification follows established guidelines, with assignments updated as new evidence emerges from research and clinical observation.

No pathogenic or likely-pathogenic ClinVar variants recorded yet for this gene.

Associated conditions

Alterations in PRICKLE1 have been associated with developmental conditions affecting the nervous system and skeleton, though the full range of clinical presentations continues to be characterised. Research suggests that disruptions to planar cell polarity signalling can influence neural tube closure and other embryonic processes, potentially contributing to structural anomalies. The inheritance pattern and phenotypic spectrum associated with PRICKLE1 variants are areas of ongoing clinical investigation, with studies working to establish clearer genotype-phenotype correlations.

No disease links recorded for this gene in our reference set.

UK clinical status

Frequently asked questions

What does the PRICKLE1 gene do?

PRICKLE1 provides instructions for making a protein that helps establish planar cell polarity, the process by which cells become oriented in a coordinated direction within tissue layers during embryonic development. This is particularly important for proper formation of the nervous system and skeletal structures.

How is PRICKLE1 inherited?

The inheritance pattern associated with PRICKLE1 variants varies depending on the specific genetic change and clinical context. Determining inheritance requires analysis of family history and genetic testing results, typically conducted through clinical genetic services.

Are there genetic tests available for PRICKLE1?

PRICKLE1 can be analysed through various genetic testing approaches, including targeted gene sequencing and broader genomic panels. Testing availability and appropriateness depend on clinical presentation and family history, with genetic counselling recommended to discuss testing options.

Educational content. This page is not medical or genetic advice, is not individually reviewed by a clinician for each reader, and should not replace a consultation with a qualified healthcare professional or genetic counsellor. If you are considering genetic testing or acting on a test result, book a consultation.
Data sources Last updated 17 April 2026. Content compiled from HGNC · MedlinePlus Genetics · ClinGen · Genomics England PanelApp · NHS National Genomic Test Directory · ClinVar · UniProt · AlphaFold .